Recent   Publications

• Velasco-Bolom, J. L., Corzo, G., & Garduño-Juárez, R.
  "Molecular Dynamics Simulation Of The Membrane Binding And Disruption Mechanisms By Antimicrobial Scorpion Venom-Derived Peptides",
  Journal of Biomolecular Structure and Dynamics, (just-accepted), 1-40.


• Martínez-Archundia, M., Colín-Astudillo, B., Moreno-Vargas, L. M., Ramírez-Galicia, G., Garduño-Juárez, R., Deeb, O., ... & Correa-Basurto, J.
  "Ligand recognition properties of the vasopressin V2 receptor studied under QSAR and molecular modeling strategies",
  Chemical Biology & Drug Design, (just-accepted).


• Villarreal-Ramirez, E., Eliezer, D., Garduño-Juárez, R., Gericke, A., Perez-Aguilar, J. M., & Boskey, A.
  "Phosphorylation regulates the secondary structure and function of dentin phosphoprotein peptides",
  Bone, 2017;95:65-75.


• Luna-Martínez, O. D., Vidal-Limón, A., Villalba-Velázquez, M. I., Sánchez-Alcalá, R., Garduño-Juárez, R., Uversky, V. N., & Becerril, B.
  "Simple approach for ranking structure determining residues",
  PeerJ, 2016;4:e2136.


• Montañez-Godínez N, Martínez-Olguín AC, Deeb O, Garduño-Juárez R, Ramírez-Galicia G.
  "QSAR/QSPR as an application of artificial neural networks",
  Methods Mol Biol. 2015;1260:319-33. doi: 10.1007/978-1-4939-2239-0_19.


• Contreras-Romo MC, Martínez-Archundia M, Deeb O, Slusarz MJ, Ramírez-Salinas G, Garduño-Juárez R, Quintanar-Stephano A, Ramírez-Galicia G, Correa-Basurto J.
  "Exploring the ligand recognition properties of the human vasopressin V1a receptor using QSAR and molecular modeling studies",
  PLoS Genet. 2015 Feb 3;11(2):e1004961. doi: 10.1371/journal.pgen.1004961. eCollection 2015 Feb.


• Villarreal-Ramirez E, Garduño-Juarez R, Gericke A, Boskey A.
  "The role of phosphorylation in dentin phosphoprotein peptide absorption to hydroxyapatite surfaces: A molecular dynamics study",
  Connect Tissue Res. 2014 Aug;55 Suppl 1:134-7. doi: 10.3109/03008207.2014.923870.


• Sánchez-González G, Kim JK, Kim DS, Garduño-Juárez R.
  "A beta-complex statistical four body contact potential combined with a hydrogen bond statistical potential recognizes the correct native structure from protein decoy sets",
  Proteins. 2013 Aug;81(8):1420-33. doi: 10.1002/prot.24293. Epub 2013 Jun 1.


• Pulawski W, Filipek S, Zwolinska A, Debinski A, Krzysko K, Garduño-Juárez R, Viswanathan S, Renugopalakrishnan V.
  "Low-temperature molecular dynamics simulations of horse heart cytochrome c and comparison with inelastic neutron scattering data",
  Eur Biophys J. 2013 Apr;42(4):291-300. doi: 10.1007/s00249-012-0874-9. Epub 2012 Dec 8.


• Ramírez-Galicia G, Garduño-Juárez R, Correa-Basurto J, Deeb O.
  "Exploring QSARs for inhibitory effect of a set of heterocyclic thrombin inhibitors by multilinear regression refined by artificial neural network and molecular docking simulations",
  J Enzyme Inhib Med Chem. 2012 Apr;27(2):174-86. doi: 10.3109/14756366.2011.582467. Epub 2011 Jun 3.


• Mondragón-Sánchez JA, Santamaria R, Garduño-Juárez R.
  "Docking on the DNA G-quadruplex: a molecular electrostatic potential study",
  Biopolymers. 2011 Sep;95(9):641-50. doi: 10.1002/bip.21634. Epub 2011 Apr 7.


• Deeb O, Rosales-Hernández MC, Gómez-Castro C, Garduño-Juárez R, Correa-Basurto J.
  "Exploration of human serum albumin binding sites by docking and molecular dynamics flexible ligand-protein interactions",
  Biopolymers. 2010 Feb;93(2):161-70. doi: 10.1002/bip.21314.


• Hernández, L. G. P., Vázquez, K. R., & Juárez, R. G.
  "Estimation of 3d protein structure by means of parallel particle swarm optimization",
  In Evolutionary Computation (CEC), 2010 IEEE Congress on (pp. 1-8). IEEE.

Copyright © 2017 Ramón Garduño-Juárez